<jats:p>
<jats:italic>Campylobacter</jats:italic>
species are the leading cause of gastroenteritis worldwide and an emerging threat in developing countries. Here, we report the draft whole-genome sequences of 51
<jats:named-content content-type="genus-species">Campylobacter jejuni</jats:named-content>
and 12
<jats:named-content content-type="genus-species">Campylobacter coli</jats:named-content>
strains isolated from patients with gastroenteritis in Santiago, Chile.
</jats:p>